Differences

This shows you the differences between two versions of the page.

--- software [2022/11/09 13:35]
luca
+++ software [2022/12/13 17:07] (current)
luca [Github Repository]
@@ Line 1: / Line 1: @@
-====== ASPRAlign ======
+====== GitHub Repository ======
+[[https://github.com/bdslab|Bioshape and Data Science Lab]]
+====== TaxonClassifier ======
+[[https://github.com/bdslab/TaxonClassifier|TaxonClassifier]] is a tool for automatic taxonomy reconstruction via agglomerative clustering.
+  * Quadrini, Michela; Tesei, Luca; Merelli, Emanuela (2022): Benchmark of 5S, 16S and 23S rRNA Secondary Structures. figshare. Dataset. [[https://doi.org/10.6084/m9.figshare.20731783.v1]]
+  * Quadrini, Michela; Tesei, Luca; Merelli, Emanuela (2022): Automatic Generation of Pseudoknotted RNAs Taxonomy. Submitted, Under Revision. The work introduces the benchmark linked above.
-[[https://github.com/bdslab/aspralign|ASPRAlign]] is a command line tool for Algebraic Structural Pseudoknot RNA Alignment.
@@ Line 9: / Line 17: @@
 [[https://github.com/bdslab/aspralign|ASPRAlign]] is a command line tool for Algebraic Structural Pseudoknot RNA Alignment.
-  * {{ :aspralign-0.91.zip |Download}} the last version of ASPRAlign
+  * Quadrini, M., Tesei, L. & Merelli, E. An algebraic language for RNA pseudoknots comparison. BMC Bioinformatics 20 (Suppl 4), 161 (2019). [[https://doi.org/10.1186/s12859-019-2689-5]]
-  * [[https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2689-5|Paper]] about Algebraic and Structural RNA Trees and computation of the ASPRA Distance among RNA secondary structures with arbitrary pseudoknots
+  * Michela Quadrini, Luca Tesei, Emanuela Merelli, ASPRAlign: a tool for the alignment of RNA secondary structures with arbitrary pseudoknots, Bioinformatics, Volume 36, Issue 11, June 2020, Pages 3578–3579, [[https://doi.org/10.1093/bioinformatics/btaa147]]
+  * [[https://github.com/bdslab/aspralign/tree/master/download|Download]] the last version of ASPRAlign
 ====== jHoles ======